Cytobank Enterprise

The cloud-based Cytobank data analysis platform is an ideal solution for immunologists and cytometrists who need to quickly gain insights from large datasets while having confidence in their results, reducing subjectivity of their analysis and eliminating error-prone and time-consuming steps. It offers fully integrated and quality-tested tools for advanced cytometry data analysis and statistical evaluation, providing comprehensive workflow coverage and automation.

Enterprise licenses provide access to a private cloud and are designed to meet the needs of larger research teams in institutions, biopharma R&D or clinical research organizations. Different license types are available depending on your needs.

We offer powerful algorithms for automatic data clean up, dimensionality reduction, automated gating, clustering and biomarkers prediction to accelerate your research. Use the Cytobank platform to manage and archive flow and mass cytometry or other single-cell data and to easily collaborate with colleagues across disciplines and geographies from any web-based device.

Cytobank Enterprise Features

Reduce Subjectivity

Data to Insight


Democratize ML-assisted Analysis

  • Made for biologists, no coding or plugins required, visit the Learning Center
  • Online knowledge repository full of articles, tips and tricks and support request form for new questions
  • Use the Experiment Manager to organize and find your projects, use the tree view to show relationships between experiments

Explore Cytobank Enterprise Licenses


Cytobank Enterprise Specifications

Compatibility FCS 2.0, 3.0, and 3.1 files from instrument agnostic. DROP is able to import any numeric data in a text delimited (comma, semicolon, tab) format.
Plot Types Contour Plots, Density Plots, Dot Plots, Heatmap, Histograms, Overlay Plots
Algorithms CITRUS, FlowSOM, SPADE, viSNE, UMAP, opt-SNE, tSNE-CUDA, Automatic Gating, PeacoQC
  • Student’s t-test
  • Mann-Whitney U test
  • Paired student’s t-test
  • Wilcoxon signed-rank test
  • Kruskal-Wallis H test
  • One-way analysis of variance
  • Two-way analysis of variance
License Type Academic, Commercial
License Term 1–3 Years

Content and Resources

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Resource Type
I’m a Biologist, not a Programmer! Infographic: Snapshot of the workflow for high dimensional data analysis from start to publication, Cytobank solutions vs. others.
Cytobank Platform Brochure The Cytobank platform is an easy-to-learn cloud-based solution for high dimensional data analysis, and a reliable tool for visual data management and controlled sharing.
An Automated FCS File Import and FlowSOM run in the Cytobank Platform Using the Application Programming Interface Learn step-by-step how to use an R script to automatically upload files to the Cytobank platform and perform an automated FlowSOM run, all via the API.
Using Standardized Dry Antibody Panels for Flow Cytometry in the Assessment of Altered Immune Profiles in Response to SARS-CoV2 Infection In order to identify early indicators of disease severity in SARS-CoV2-infection, the proportions of well-established immune cell phenotypes have been subject to extensive research, utilizing flow cytometry as a core technology1-3. In order to ensure comparable and consistent results in the massively multi-institutional research setting of a global pandemic, the use of standardized antibody panels and procedures, as demonstrated by The ONE Study4-6, is a promising approach that also can lower technical barriers
Cytobank Workflow - Unbiased Discovery or Guided Analysis Using Prior Knowledge? Flyer: Which algorithm to use for each research question? How to get the most out of your data.

Technical Documents

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For Research Use Only. Not for use in diagnostic procedures.